Proteins by subfamily and organism for prokaryotes

speciesphlyogroup
A sp.proteobacteria                        11A sp.
A tumefaciensproteobacteria                          A tumefaciens
A tumefaciensproteobacteria                          A tumefaciens
A marginaleproteobacteria                          A marginale
A sp.proteobacteria                        44A sp.
B henselaeproteobacteria                          B henselae
B quintanaproteobacteria                          B quintana
B bacteriovorusproteobacteria                      1  1B bacteriovorus
B bronchisepticaproteobacteria                        11B bronchiseptica
B parapertussisproteobacteria                          B parapertussis
B pertussisproteobacteria                          B pertussis
B japonicumproteobacteria                        11B japonicum
B abortusproteobacteria                          B abortus
B melitensisproteobacteria                          B melitensis
B melitensisproteobacteria                          B melitensis
B suisproteobacteria                          B suis
B aphidicolaproteobacteria                          B aphidicola
B aphidicolaproteobacteria                          B aphidicola
B aphidicolaproteobacteria                          B aphidicola
B malleiproteobacteria                          B mallei
B pseudomalleiproteobacteria                        11B pseudomallei
B pseudomalleiproteobacteria                        11B pseudomallei
B sp.proteobacteria                          B sp.
B thailandensisproteobacteria                          B thailandensis
C jejuniproteobacteria                          C jejuni
C jejuniproteobacteria                          C jejuni
C Blochmanniaproteobacteria                          C Blochmannia
C Blochmanniaproteobacteria                          C Blochmannia
C Pelagibacterproteobacteria                          C Pelagibacter
C crescentusproteobacteria                          C crescentus
C violaceumproteobacteria                      1  1C violaceum
C psychrerythraeaproteobacteria                      1 23C psychrerythraea
C burnetiiproteobacteria                          C burnetii
D aromaticaproteobacteria                      1 23D aromatica
D psychrophilaproteobacteria                      1  1D psychrophila
D desulfuricansproteobacteria                      1 23D desulfuricans
D vulgarisproteobacteria                      1  1D vulgaris
E canisproteobacteria                          E canis
E ruminantiumproteobacteria                          E ruminantium
E ruminantiumproteobacteria                          E ruminantium
E ruminantiumproteobacteria                          E ruminantium
E carotovoraproteobacteria                        11E carotovora
E coliproteobacteria                        22E coli
E coliproteobacteria                        11E coli
E coliproteobacteria                        22E coli
E coliproteobacteria                        22E coli
F tularensisproteobacteria                          F tularensis
G metallireducensproteobacteria                      1  1G metallireducens
G sulfurreducensproteobacteria                          G sulfurreducens
G oxydansproteobacteria                        11G oxydans
H ducreyiproteobacteria                        11H ducreyi
H influenzaeproteobacteria                        11H influenzae
H influenzaeproteobacteria                        11H influenzae
H chejuensisproteobacteria                      1 34H chejuensis
H hepaticusproteobacteria                        11H hepaticus
H pyloriproteobacteria                          H pylori
H pyloriproteobacteria                        11H pylori
I loihiensisproteobacteria                        11I loihiensis
L pneumophilaproteobacteria                      1 23L pneumophila
L pneumophilaproteobacteria                      1 12L pneumophila
L pneumophilaproteobacteria                      1 12L pneumophila
M magneticumproteobacteria                        11M magneticum
M succiniciproducensproteobacteria                        11M succiniciproducens
M lotiproteobacteria                          M loti
M capsulatusproteobacteria                        33M capsulatus
N gonorrhoeaeproteobacteria                          N gonorrhoeae
N meningitidisproteobacteria                          N meningitidis
N meningitidisproteobacteria                          N meningitidis
N winogradskyiproteobacteria                        11N winogradskyi
N oceaniproteobacteria                        33N oceani
N europaeaproteobacteria                        11N europaea
N multiformisproteobacteria                          N multiformis
P multocidaproteobacteria                        22P multocida
P carbinolicusproteobacteria                          P carbinolicus
P profundumproteobacteria                      1 12P profundum
P luminescensproteobacteria                        11P luminescens
P haloplanktisproteobacteria                        11P haloplanktis
P aeruginosaproteobacteria                      1 12P aeruginosa
P fluorescensproteobacteria                      1 23P fluorescens
P fluorescensproteobacteria                      1 12P fluorescens
P putidaproteobacteria                      1 12P putida
P syringaeproteobacteria                      1 12P syringae
P syringaeproteobacteria                      1 23P syringae
P syringaeproteobacteria                      1 34P syringae
P arcticusproteobacteria                        11P arcticus
R eutrophaproteobacteria                          R eutropha
R solanacearumproteobacteria                          R solanacearum
R sphaeroidesproteobacteria                          R sphaeroides
R palustrisproteobacteria                        11R palustris
R rubrumproteobacteria                      1  1R rubrum
R conoriiproteobacteria                          R conorii
R felisproteobacteria                          R felis
R prowazekiiproteobacteria                          R prowazekii
R typhiproteobacteria                          R typhi
S entericaproteobacteria                        11S enterica
S entericaproteobacteria                        11S enterica
S entericaproteobacteria                        11S enterica
S entericaproteobacteria                        11S enterica
S typhimuriumproteobacteria                        11S typhimurium
S oneidensisproteobacteria                      1 12S oneidensis
S boydiiproteobacteria                        11S boydii
S dysenteriaeproteobacteria                        11S dysenteriae
S flexneriproteobacteria                        11S flexneri
S flexneriproteobacteria                        11S flexneri
S sonneiproteobacteria                        11S sonnei
S pomeroyiproteobacteria                          S pomeroyi
S melilotiproteobacteria                        11S meliloti
T denitrificansproteobacteria                        11T denitrificans
T crunogenaproteobacteria                          T crunogena
T denitrificansproteobacteria                          T denitrificans
V choleraeproteobacteria                        22V cholerae
V fischeriproteobacteria                        11V fischeri
V parahaemolyticusproteobacteria                        11V parahaemolyticus
V vulnificusproteobacteria                        11V vulnificus
V vulnificusproteobacteria                        11V vulnificus
W glossinidiaproteobacteria                          W glossinidia
W endosymbiontproteobacteria                      1  1W endosymbiont
W endosymbiontproteobacteria                          W endosymbiont
W succinogenesproteobacteria                          W succinogenes
X axonopodisproteobacteria                          X axonopodis
X campestrisproteobacteria                        22X campestris
X campestrisproteobacteria                        22X campestris
X campestrisproteobacteria                          X campestris
X oryzaeproteobacteria                          X oryzae
X fastidiosaproteobacteria                        33X fastidiosa
X fastidiosaproteobacteria                        44X fastidiosa
Y pestisproteobacteria                        11Y pestis
Y pestisproteobacteria                        11Y pestis
Y pestisproteobacteria                        11Y pestis
Y pseudotuberculosisproteobacteria                        11Y pseudotuberculosis
Z mobilisproteobacteria                          Z mobilis
A variabiliscyanobacteria                      1 23A variabilis
G violaceuscyanobacteria                      2 13G violaceus
N sp.cyanobacteria                      2  2N sp.
P marinuscyanobacteria                          P marinus
P marinuscyanobacteria                      1 12P marinus
P marinuscyanobacteria                          P marinus
P marinuscyanobacteria                      1  1P marinus
P marinuscyanobacteria                          P marinus
S elongatuscyanobacteria                      1  1S elongatus
S elongatuscyanobacteria                      1  1S elongatus
S sp.cyanobacteria                      1 12S sp.
S sp.cyanobacteria                      1 12S sp.
S sp.cyanobacteria                      1 12S sp.
S sp.cyanobacteria                      1  1S sp.
T elongatuscyanobacteria                      1  1T elongatus
B anthracisfirmicutes                      2 13B anthracis
B anthracisfirmicutes                      2 13B anthracis
B anthracisfirmicutes                      2 13B anthracis
B cereusfirmicutes                      2 35B cereus
B cereusfirmicutes                      2 13B cereus
B cereusfirmicutes                      2 13B cereus
B clausiifirmicutes                      1 12B clausii
B haloduransfirmicutes                      1 23B halodurans
B licheniformisfirmicutes                      1 12B licheniformis
B licheniformisfirmicutes                      1 12B licheniformis
B subtilisfirmicutes                      1 12B subtilis
B thuringiensisfirmicutes                      2 13B thuringiensis
C hydrogenoformansfirmicutes                          C hydrogenoformans
C acetobutylicumfirmicutes                      3  3C acetobutylicum
C perfringensfirmicutes                      1  1C perfringens
C tetanifirmicutes                      1  1C tetani
E faecalisfirmicutes                      1 23E faecalis
G kaustophilusfirmicutes                      1 12G kaustophilus
L acidophilusfirmicutes                          L acidophilus
L johnsoniifirmicutes                          L johnsonii
L plantarumfirmicutes                          L plantarum
L sakeifirmicutes                          L sakei
L lactisfirmicutes                      1  1L lactis
L innocuafirmicutes                      1  1L innocua
L monocytogenesfirmicutes                      1  1L monocytogenes
L monocytogenesfirmicutes                      1  1L monocytogenes
M florumfirmicutes                          M florum
M thermoaceticafirmicutes                        11M thermoacetica
M capricolumfirmicutes                        11M capricolum
M gallisepticumfirmicutes                      1  1M gallisepticum
M genitaliumfirmicutes                      1  1M genitalium
M hyopneumoniaefirmicutes                          M hyopneumoniae
M hyopneumoniaefirmicutes                          M hyopneumoniae
M hyopneumoniaefirmicutes                          M hyopneumoniae
M mobilefirmicutes                      1  1M mobile
M mycoidesfirmicutes                        11M mycoides
M penetransfirmicutes                      1  1M penetrans
M pneumoniaefirmicutes                      1  1M pneumoniae
M pulmonisfirmicutes                          M pulmonis
M synoviaefirmicutes                          M synoviae
O iheyensisfirmicutes                      2 13O iheyensis
O yellowsfirmicutes                          O yellows
S aureusfirmicutes                          S aureus
S aureusfirmicutes                          S aureus
S aureusfirmicutes                        11S aureus
S aureusfirmicutes                        11S aureus
S aureusfirmicutes                          S aureus
S aureusfirmicutes                        11S aureus
S aureusfirmicutes                          S aureus
S epidermidisfirmicutes                          S epidermidis
S epidermidisfirmicutes                          S epidermidis
S haemolyticusfirmicutes                        11S haemolyticus
S saprophyticusfirmicutes                          S saprophyticus
S agalactiaefirmicutes                      1 12S agalactiae
S agalactiaefirmicutes                      1 12S agalactiae
S agalactiaefirmicutes                      1 12S agalactiae
S mutansfirmicutes                      1  1S mutans
S pneumoniaefirmicutes                      1  1S pneumoniae
S pneumoniaefirmicutes                      1  1S pneumoniae
S pyogenesfirmicutes                      1  1S pyogenes
S pyogenesfirmicutes                      1 23S pyogenes
S pyogenesfirmicutes                      1 12S pyogenes
S pyogenesfirmicutes                      1 12S pyogenes
S pyogenesfirmicutes                      1  1S pyogenes
S pyogenesfirmicutes                      1  1S pyogenes
S pyogenesfirmicutes                      1 12S pyogenes
S thermophilusfirmicutes                      1  1S thermophilus
S thermophilusfirmicutes                      1  1S thermophilus
T tengcongensisfirmicutes                          T tengcongensis
U parvumfirmicutes                          U parvum
B longumactinobacteria                      1  1B longum
C diphtheriaeactinobacteria                      1 12C diphtheriae
C efficiensactinobacteria                      1 23C efficiens
C glutamicumactinobacteria                      1 34C glutamicum
C glutamicumactinobacteria                      1 34C glutamicum
C jeikeiumactinobacteria                      1  1C jeikeium
L xyliactinobacteria                        11L xyli
M aviumactinobacteria                          M avium
M bovisactinobacteria                      1  1M bovis
M lepraeactinobacteria                          M leprae
M tuberculosisactinobacteria                      1  1M tuberculosis
M tuberculosisactinobacteria                      1  1M tuberculosis
N farcinicaactinobacteria                      2 13N farcinica
P acnesactinobacteria                        22P acnes
S avermitilisactinobacteria                      3 14S avermitilis
S coelicoloractinobacteria                      2 13S coelicolor
S thermophilumactinobacteria                      2  2S thermophilum
T fuscaactinobacteria                        11T fusca
T whippleiactinobacteria                        11T whipplei
T whippleiactinobacteria                        11T whipplei
B fragilisbacteroidetes/chlorobi                      1 12B fragilis
B fragilisbacteroidetes/chlorobi                      1 23B fragilis
B thetaiotaomicronbacteroidetes/chlorobi                      1 34B thetaiotaomicron
C chlorochromatiibacteroidetes/chlorobi                          C chlorochromatii
C tepidumbacteroidetes/chlorobi                        11C tepidum
P luteolumbacteroidetes/chlorobi                      1  1P luteolum
P gingivalisbacteroidetes/chlorobi                        11P gingivalis
S ruberbacteroidetes/chlorobi                          S ruber
D radioduransdeinococcus-thermus                      1  1D radiodurans
T thermophilusdeinococcus-thermus                          T thermophilus
T thermophilusdeinococcus-thermus                        11T thermophilus
B burgdorferispirochaetes                          B burgdorferi
B gariniispirochaetes                          B garinii
L interrogansspirochaetes                        11L interrogans
L interrogansspirochaetes                        11L interrogans
T denticolaspirochaetes                      1  1T denticola
T pallidumspirochaetes                          T pallidum
C Protochlamydiachlamydiae/verrucomicrobia                      3  3C Protochlamydia
C muridarumchlamydiae/verrucomicrobia                      2  2C muridarum
C trachomatischlamydiae/verrucomicrobia                      2  2C trachomatis
C trachomatischlamydiae/verrucomicrobia                      2  2C trachomatis
C abortuschlamydiae/verrucomicrobia                      2  2C abortus
C caviaechlamydiae/verrucomicrobia                      2  2C caviae
C pneumoniaechlamydiae/verrucomicrobia                      2  2C pneumoniae
C pneumoniaechlamydiae/verrucomicrobia                      2  2C pneumoniae
C pneumoniaechlamydiae/verrucomicrobia                      2  2C pneumoniae
C pneumoniaechlamydiae/verrucomicrobia                      2  2C pneumoniae
A aeolicusaquificae                          A aeolicus
D ethenogeneschloroflexi                        33D ethenogenes
D sp.chloroflexi                        11D sp.
T maritimathermotogae                        11T maritima
F nucleatumfusobacteria                      2 13F nucleatum
R balticaplanctomycetes                      3 25R baltica
speciesphlyogroup
  • click on count for listing of members
  • click on subfamily column title for description page
  • mouseover organism row name for full name and description, click for description page
  • other views: model eukaryotes, all eukaryotes, archaea, prokaryotes
  • subfamily assignment as bitscore >100 to hmm model as described in Flaus et al, NAR v34 p2887, 2006
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